PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015007-RA
Common NameICE1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 534aa    MW: 57836.5 Da    PI: 5.2522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015007-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12350392754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  WALNUT_00015007-RA 350 MAERRRRKKLNDRLYLLRSVVPKiS------KMDRASILGDAIEYLKEL 392
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.497343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16346412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9349392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-12350396No hitNo description
Gene3DG3DSA:4.10.280.104.1E-15350405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.02E-7463523No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLSRVNGVWM DDREDHDPAS WARTTNDANT SNSCGVAEKN EHDLGSLSTF KSMLEIEDDW  60
YNMANNTLQS HTDIRDLTFS PNLADHPDNL LLNPVDSSSS CSPSSSVFTN LDPSQVNYFL  120
PPKPTLSSLI NGLSSNPLEN GFDLGCEVGF LEAQTSNAST LLNRGGGVLS NFTDLSTNSQ  180
INAPSICSDS QLRLPNFPET GAGFVGFKAF DGGSGNALFM NRSKILRPLE SFPSMGAQPT  240
LFQKRAALRK NIADSGGNLS ISTSVEGDKG KTETHEPGEG KRKLSNGDDV EDASFDGSGL  300
NYDSDEFMEN DKAEGNAKNT GGNSSNATST VTGGGEQKGK KKGLPAKNLM AERRRRKKLN  360
DRLYLLRSVV PKISKMDRAS ILGDAIEYLK ELLQRINDLH NELESTTPGS SLTPTTSFHP  420
LTPTPPALPS HIKEELIPSS LPSPNSQAAR VEVRLREGRA VNIHMFCGRR PGLLLSTMRA  480
LDNLGLDIQQ AVISCFNGFA MDIFRAEQCK EGQDVHPEQI KAVLLDSAGV HGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339357KKKGLPAKNLMAERRRRKK
2351358ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8532340.0KC853234.1 Juglans regia inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038116.10.0Inducer of CBF expression 1
SwissprotQ9LSE21e-141ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0D3L7910.0A0A0D3L791_9R
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-134bHLH family protein